For a full list see: PubMed or Google scholar


Systematic discovery and functional dissection of enhancers needed for cancer cell fitness and proliferation. Chen PB, Fiaux PC, Li B, Zhang K, Kubo N, Jiang S, Hu R, Rooholfada E, Wu S, Wang M, Wang W, McVicker G, Mischel PS, Ren B. Cell Rep., 2022 Nov 8;41(6):111630.


CRISPR-SE: A brute force search engine for CRISPR design. Li B, Chen PB, Diao Y. NAR Genom Bioinform. 2021 Feb 23:3(1):lqab013.


Directed remodeling of the mouse gut microbiome inhibits the development of atherosclerosis. Chen PB, Black AS, Sobel AL, Zhao Y, Mukherjee P, Molparia B, Moore NE, Muench G, Wu J, Chen W, Pinto A, Maryanoff BE, Saghatelian A, Soroosh P, Torkamani A, Leman LJ, Ghadiri MR. Nat Biotechnol. 2020 Nov; 38(11): 1288-1297.

Discovering functional sequences with RELICS, an analysis method for tiling CRISPR screens. Fiaux PC, Chen HV, Chen PB, Chen AR, McVicker G. PLOS Comput Biol. 2020 Sep 16; 16 (9):e1008194.


Chemotherapeutic remodeling of gut microbiome (2018). Ghadiri MR, Leman LJ, Chen PB, Zhao Y, Torkamani A, Black AS